Best Shopify Apps for QuickBooks

Key Features

Sync Shopify retail and B2B sales activity to QuickBooks

Pricing: Free to Install

Key Features

Automates ecommerce accounting with a breeze by syncing Shopify to QuickBooks Online, QuickBooks Desktop, Xero and 30+ marketplaces. Eliminate manual data entry by syncing orders, taxes, inventory, refunds and payouts in real time. Simplify reconciliation by matching sales, deposits, and fees automatically. Avoid errors, scale with confidence, and gain insights into profitability, expenses, and sales trends. Compatible with Amazon, eBay, Walmart, and more for seamless multichannel operations. Real-time QuickBooks Online & Xero sync for orders, taxes, and payouts. Shopify reconciliation: Match deposits and payouts with QuickBooks instantly Multichannel inventory sync: Keep stock levels updated across all sales channels AI financial tracking: Gain insights into revenue, expenses & profitability B2B: sync PO#s, payment terms, match company & location, 2-way payments sync

Pricing: From $59/month, $59

Key Features

A2X makes reconciling your Shopify payout data in QuickBooks Online (QBO), Xero, Sage, or NetSuite a breeze. Every Shopify transaction – sales, fees, taxes, refunds, gift cards, and more – is categorized into accurate summaries that reconcile perfectly with deposits in your accounting software. Leading merchants, accountants, and bookkeepers trust A2X to save hours on their bookkeeping, accurately track their taxes & COGS, increase the quality of their P&L, and gain true financial visibility. Accurately track your Shopify payout data in QuickBooks, Xero, Sage, or NetSuite Avoid overpaying taxes by assigning tax rules to every Shopify transaction type Stay on top of COGS by matching your cost of goods sold with your Shopify sales Streamline your B2B workflow by syncing wholesale orders with your GL Automate your ecommerce accounting for every channel you sell on including POS

Pricing: From $29/month, $29

Key Features

Sync sales data to QuickBooks Online easily in an automated manner - Individual orders OR Summary sync options. With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. With Summary Sync our app will create one entry for each Payout from Shopify. and will create one entry per day for each of the other payment methods. Individual Order Sync - Includes Customer, Products, Taxes and All details Summary Invoice Sync - Create Invoice by Payment method for Easy Reconciliation Automated Sync Process Very Easy Reconciliation

Pricing: Free, From $10/month

Key Features

Webgility is an ecommerce accounting and inventory automation solution for QuickBooks Desktop/Enterprise. Quickly connect your Shopify store, online marketplaces, and over 50 other business apps to QuickBooks Desktop. Sync orders, customers, inventory, taxes, payouts, fees, and shipping info to QuickBooks automatically and in real time. Transfer product listings and update prices between stores, eliminate manual accounting errors, and scale to more channels. Compatible with DTC and B2B stores. Detailed accounting sync posts transaction events as individual line items. Shopify reconciliation matches bank deposits and payouts quickly and accurately. Accounting automation eliminates errors from manual bookkeeping. Multichannel inventory sync updates all product listings with each sale. For B2B, sync PO#s, payment terms, match company & location, 2-way payments sync

Pricing: From $139/month, $139

Key Features

Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods. Individual Order Sync - Includes Customer, Products, Taxes and All details Automated Sync Process Very Easy Reconciliation Summary Invoice Sync - Sync Daily Summary or Settlement Summary

Pricing: From $40/month, $40

Key Features

Struggling to manage data from Shopify, PayPal, and more? Bookkeep automates eCommerce & retail accounting, handling unlimited transactions across 20+ platforms and reconciling payments to match your bank feeds effortlessly. Bookkeep's sales tax automation service ensures accurate payments and compliance across all states. Automate sales, accounting, and tax—no more manual data entry or guesswork about cash flow and costs, and keep your financials up to date, down to the penny! Sync sales, tax, fees, COGS & payouts to QuickBooks, Xero, Intacct, NetSuite Recognize revenue by Order Date or Ship Date, customized for all your stores. Captures sales tax withheld, labels adjustments, & supports channel segmentation Automate sales tax across all jurisdictions where your business operates. Manage multiple locations and sales channels with 20+ platforms to connect to.

Pricing: From $19/month, $19

Key Features

On a daily basis, Amaka syncs your orders data from Shopify into Xero, QuickBooks Online (QBO) or MYOB. All transactions (sales, COGS, refunds, fees, gift cards, taxes and payment types) are mapped to relevant accounts by the integration. With fees accounted for, Amaka can automatically match transactions to the Shopify payouts, meaning bank reconciliation becomes lightning-fast. Save hours every month on manual data entry and reconciliation. Never worry about missed orders or duplicates. Transactions are synced into individual invoices or a daily summarised invoice Transactions automatically matched to bank feed for fast reconciliation Back sync up to 12 months of historical data 2-Minute, Advanced or Guided setup options available Unlimited 1:1 support through video call, live chat or helpdesk

Pricing: Free, From $18/month